Eclipse fails to load: Java error

[gabrielr]

Hey everyone,

I switched to Kubuntu a few weeks ago, and after installing Eclipse, I started getting error messages. The following is what I get, although this is from the latest attempt. I've tried uninstalling java5 and reinstalling it, and I've tried java6 as well as blackdown JDK, all installed using apt-get.

I'm using Gusty Gibbon (obviously), on an x86 laptop.

I also copied the log referenced at the bottom of the error message from the shell terminal, but thought it was too long, so I've saved it here: http://3rd-element.net/hs_err_pid10002.log.txt

ERROR LOG:

$ eclipse
searching for compatible vm...
testing /usr/lib/jvm/java-gcj...not found
testing /usr/lib/kaffe/pthreads...not found
testing /usr/lib/jvm/java-6-sun...found

*** ERROR ***: Mon Oct 29 23:56:10 EDT 2007 org.eclipse.core.internal.resources.ResourceExcept ion: Resource is out of sync with the file system: /PRJ1/META-INF/MANIFEST.MF.
at org.eclipse.core.internal.localstore.FileSystemRes ourceManager.read(FileSystemResourceManager.java:6 06)
at org.eclipse.core.internal.resources.File.getConten ts(File.java:290)
at org.eclipse.core.internal.resources.File.getConten ts(File.java:279)
at org.eclipse.jst.j2ee.componentcore.J2EEModuleVirtu alComponent.getManifestClasspath(J2EEModuleVirtual Component.java:89)
at org.eclipse.jst.j2ee.componentcore.J2EEModuleVirtu alComponent.getManifestReferences(J2EEModuleVirtua lComponent.java:118)
at org.eclipse.jst.j2ee.componentcore.J2EEModuleVirtu alComponent.getReferences(J2EEModuleVirtualCompone nt.java:62)
at org.eclipse.jst.common.jdt.internal.classpath.Flex ibleProjectContainer.computeClasspathEntries(Flexi bleProjectContainer.java:184)
at org.eclipse.jst.common.jdt.internal.classpath.Flex ibleProjectContainer.<init>(FlexibleProjectContain er.java:122)
at org.eclipse.jst.j2ee.internal.web.classpath.WebApp LibrariesContainer.<init>(WebAppLibrariesContainer .java:48)
at org.eclipse.jst.j2ee.internal.web.classpath.WebApp LibrariesContainerInitializer.initialize(WebAppLib rariesContainerInitializer.java:34)
at org.eclipse.jdt.internal.core.JavaModelManager.ini tializeContainer(JavaModelManager.java:1924)
at org.eclipse.jdt.internal.core.JavaModelManager.get ClasspathContainer(JavaModelManager.java:1267)
at org.eclipse.jdt.core.JavaCore.getClasspathContaine r(JavaCore.java:1470)
at org.eclipse.jdt.internal.core.JavaProject.getResol vedClasspath(JavaProject.java:2169)
at org.eclipse.jdt.internal.core.JavaProject.getResol vedClasspath(JavaProject.java:2073)
at org.eclipse.jdt.core.JavaCore.setClasspathContaine r(JavaCore.java:4189)
at org.eclipse.jst.server.core.internal.RuntimeClassp athContainerInitializer.initialize(RuntimeClasspat hContainerInitializer.java:46)
at org.eclipse.jdt.internal.core.JavaModelManager.ini tializeContainer(JavaModelManager.java:1924)
at org.eclipse.jdt.internal.core.JavaModelManager.get ClasspathContainer(JavaModelManager.java:1267)
at org.eclipse.jdt.core.JavaCore.getClasspathContaine r(JavaCore.java:1470)
at org.eclipse.jdt.internal.core.JavaProject.getResol vedClasspath(JavaProject.java:2169)
at org.eclipse.jdt.internal.core.JavaProject.getResol vedClasspath(JavaProject.java:2073)
at org.eclipse.jdt.internal.core.JavaModelManager.det ermineIfOnClasspath(JavaModelManager.java:808)
at org.eclipse.jdt.internal.core.JavaModelManager.cre ate(JavaModelManager.java:697)
at org.eclipse.jdt.internal.core.JavaModelManager.cre ate(JavaModelManager.java:626)
at org.eclipse.jdt.core.JavaCore.create(JavaCore.java :1383)
at org.eclipse.jdt.internal.ui.ResourceAdapterFactory .getAdapter(ResourceAdapterFactory.java:44)
at org.eclipse.core.internal.runtime.AdapterFactoryPr oxy.getAdapter(AdapterFactoryProxy.java:63)
at org.eclipse.core.internal.runtime.AdapterManager.g etAdapter(AdapterManager.java:256)
at org.eclipse.core.runtime.PlatformObject.getAdapter (PlatformObject.java:66)
at org.eclipse.jdt.internal.ui.filters.NamePatternFil ter.select(NamePatternFilter.java:62)
at org.eclipse.jdt.internal.ui.viewsupport.ProblemTre eViewer.isFiltered(ProblemTreeViewer.java:187)
at org.eclipse.jdt.internal.ui.packageview.PackageExp lorerPart$PackageExplorerProblemTreeViewer.isFilte red(PackageExplorerPart.java:301)
at org.eclipse.jdt.internal.ui.viewsupport.ProblemTre eViewer.isExpandable(ProblemTreeViewer.java:174)
at org.eclipse.jface.viewers.AbstractTreeViewer.isExp andable(AbstractTreeViewer.java:1900)
at org.eclipse.jface.viewers.AbstractTreeViewer.updat ePlus(AbstractTreeViewer.java:2487)
at org.eclipse.jface.viewers.AbstractTreeViewer.creat eTreeItem(AbstractTreeViewer.java:754)
at org.eclipse.jface.viewers.AbstractTreeViewer$1.run (AbstractTreeViewer.java:731)
at org.eclipse.swt.custom.BusyIndicator.showWhile(Bus yIndicator.java:67)
at org.eclipse.jface.viewers.AbstractTreeViewer.creat eChildren(AbstractTreeViewer.java:705)
at org.eclipse.jface.viewers.TreeViewer.createChildre n(TreeViewer.java:892)
at org.eclipse.jface.viewers.AbstractTreeViewer$5.run (AbstractTreeViewer.java:1288)
at org.eclipse.jface.viewers.StructuredViewer.preserv ingSelection(StructuredViewer.java:1323)
at org.eclipse.jdt.internal.ui.packageview.PackageExp lorerPart$PackageExplorerProblemTreeViewer.preserv ingSelection(PackageExplorerPart.java:404)
at org.eclipse.jface.viewers.AbstractTreeViewer.input Changed(AbstractTreeViewer.java:1277)
at org.eclipse.jface.viewers.ContentViewer.setInput(C ontentViewer.java:250)
at org.eclipse.jface.viewers.StructuredViewer.setInpu t(StructuredViewer.java:1542)
at org.eclipse.jdt.internal.ui.packageview.PackageExp lorerPart.createPartControl(PackageExplorerPart.ja va:638)
at org.eclipse.ui.internal.ViewReference.createPartHe lper(ViewReference.java:332)
at org.eclipse.ui.internal.ViewReference.createPart(V iewReference.java:197)
at org.eclipse.ui.internal.WorkbenchPartReference.get Part(WorkbenchPartReference.java:566)
at org.eclipse.ui.internal.PartPane.setVisible(PartPa ne.java:290)
at org.eclipse.ui.internal.ViewPane.setVisible(ViewPa ne.java:525)
at org.eclipse.ui.internal.presentations.PresentableP art.setVisible(PresentablePart.java:140)
at org.eclipse.ui.internal.presentations.util.Present ablePartFolder.select(PresentablePartFolder.java:2 68)
at org.eclipse.ui.internal.presentations.util.LeftToR ightTabOrder.select(LeftToRightTabOrder.java:65)
at org.eclipse.ui.internal.presentations.util.TabbedS tackPresentation.selectPart(TabbedStackPresentatio n.java:394)
at org.eclipse.ui.internal.PartStack.refreshPresentat ionSelection(PartStack.java:1144)
at org.eclipse.ui.internal.PartStack.createControl(Pa rtStack.java:620)
at org.eclipse.ui.internal.PartStack.createControl(Pa rtStack.java:532)
at org.eclipse.ui.internal.PartSashContainer.createCo ntrol(PartSashContainer.java:562)
at org.eclipse.ui.internal.PerspectiveHelper.activate (PerspectiveHelper.java:244)
at org.eclipse.ui.internal.Perspective.onActivate(Per spective.java:815)
at org.eclipse.ui.internal.WorkbenchPage.onActivate(W orkbenchPage.java:2436)
at org.eclipse.ui.internal.WorkbenchWindow$6.run(Work benchWindow.java:2616)
at org.eclipse.swt.custom.BusyIndicator.showWhile(Bus yIndicator.java:67)
at org.eclipse.ui.internal.WorkbenchWindow.setActiveP age(WorkbenchWindow.java:2597)
at org.eclipse.ui.internal.WorkbenchWindow.restoreSta te(WorkbenchWindow.java:1982)
at org.eclipse.ui.internal.Workbench.doRestoreState(W orkbench.java:2873)
at org.eclipse.ui.internal.Workbench.access$14(Workbe nch.java:2821)
at org.eclipse.ui.internal.Workbench$19.run(Workbench .java:1697)
at org.eclipse.ui.internal.Workbench.runStartupWithPr ogress(Workbench.java:1437)
at org.eclipse.ui.internal.Workbench.restoreState(Wor kbench.java:1695)
at org.eclipse.ui.internal.Workbench.access$12(Workbe nch.java:1666)
at org.eclipse.ui.internal.Workbench$17.run(Workbench .java:1545)
at org.eclipse.core.runtime.SafeRunner.run(SafeRunner .java:37)
at org.eclipse.ui.internal.Workbench.restoreState(Wor kbench.java:1489)
at org.eclipse.ui.internal.WorkbenchConfigurer.restor eState(WorkbenchConfigurer.java:183)
at org.eclipse.ui.application.WorkbenchAdvisor.openWi ndows(WorkbenchAdvisor.java:702)
at org.eclipse.ui.internal.Workbench.init(Workbench.j ava:1101)
at org.eclipse.ui.internal.Workbench.runUI(Workbench. java:1863)
at org.eclipse.ui.internal.Workbench.createAndRunWork bench(Workbench.java:422)
at org.eclipse.ui.PlatformUI.createAndRunWorkbench(Pl atformUI.java:149)
at org.eclipse.ui.internal.ide.IDEApplication.run(IDE Application.java:95)
at org.eclipse.core.internal.runtime.PlatformActivato r$1.run(PlatformActivator.java:78)
at org.eclipse.core.runtime.internal.adaptor.EclipseA ppLauncher.runApplication(EclipseAppLauncher.java: 92)
at org.eclipse.core.runtime.internal.adaptor.EclipseA ppLauncher.start(EclipseAppLauncher.java:68)
at org.eclipse.core.runtime.adaptor.EclipseStarter.ru n(EclipseStarter.java:400)
at org.eclipse.core.runtime.adaptor.EclipseStarter.ru n(EclipseStarter.java:177)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Nativ e Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(Native MethodAccessorImpl.java:39)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(De legatingMethodAccessorImpl.java:25)
at java.lang.reflect.Method.invoke(Method.java:597)
at org.eclipse.core.launcher.Main.invokeFramework(Mai n.java:336)
at org.eclipse.core.launcher.Main.basicRun(Main.java: 280)
at org.eclipse.core.launcher.Main.run(Main.java:977)
at org.eclipse.core.launcher.Main.main(Main.java:952)
Exception in thread "Java indexing" java.lang.OutOfMemoryError: Java heap space
at org.eclipse.jdt.internal.compiler.util.HashtableOf Object.<init>(HashtableOfObject.java:39)
at org.eclipse.jdt.internal.compiler.util.HashtableOf Object.rehash(HashtableOfObject.java:139)
at org.eclipse.jdt.internal.compiler.util.HashtableOf Object.put(HashtableOfObject.java:112)
at org.eclipse.jdt.internal.core.index.DiskIndex.copy QueryResults(DiskIndex.java:325)
at org.eclipse.jdt.internal.core.index.DiskIndex.merg eWith(DiskIndex.java:489)
at org.eclipse.jdt.internal.core.index.Index.save(Ind ex.java:178)
at org.eclipse.jdt.internal.core.search.indexing.Inde xManager.saveIndex(IndexManager.java:588)
at org.eclipse.jdt.internal.core.search.indexing.AddJ arFileToIndex.execute(AddJarFileToIndex.java:200)
at org.eclipse.jdt.internal.core.search.processing.Jo bManager.run(JobManager.java:372)
at java.lang.Thread.run(Thread.java:619)

*** ERROR ***: Mon Oct 29 23:56:40 EDT 2007 org.eclipse.core.internal.resources.ResourceExcept ion: Resource is out of sync with the file system: /SenolWeb/META-INF/MANIFEST.MF.
at org.eclipse.core.internal.localstore.FileSystemRes ourceManager.read(FileSystemResourceManager.java:6 06)
at org.eclipse.core.internal.resources.File.getConten ts(File.java:290)
at org.eclipse.core.internal.resources.File.getConten ts(File.java:279)
at org.eclipse.jst.j2ee.componentcore.J2EEModuleVirtu alComponent.getManifestClasspath(J2EEModuleVirtual Component.java:89)
at org.eclipse.jst.j2ee.componentcore.J2EEModuleVirtu alComponent.getManifestReferences(J2EEModuleVirtua lComponent.java:118)
at org.eclipse.jst.j2ee.componentcore.J2EEModuleVirtu alComponent.getReferences(J2EEModuleVirtualCompone nt.java:62)
at org.eclipse.wst.common.componentcore.internal.buil der.DependencyGraphManager.getDependencyReferences (DependencyGraphManager.java:194)
at org.eclipse.wst.common.componentcore.internal.buil der.DependencyGraphManager.buildDependencyGraph(De pendencyGraphManager.java:170)
at org.eclipse.wst.common.componentcore.internal.buil der.DependencyGraphManager.constructIfNecessary(De pendencyGraphManager.java:76)
at org.eclipse.wst.common.componentcore.internal.buil der.DependencyGraphManager.getDependencyGraph(Depe ndencyGraphManager.java:245)
at org.eclipse.wst.common.componentcore.internal.reso urces.VirtualComponent.getReferencingComponents(Vi rtualComponent.java:418)
at org.eclipse.jst.j2ee.project.facet.EarFacetValidat or.validate(EarFacetValidator.java:75)
at org.eclipse.wst.common.project.facet.core.internal .FacetedProjectValidationBuilder.build(FacetedProj ectValidationBuilder.java:82)
at org.eclipse.core.internal.events.BuildManager$2.ru n(BuildManager.java:603)
at org.eclipse.core.runtime.SafeRunner.run(SafeRunner .java:37)
at org.eclipse.core.internal.events.BuildManager.basi cBuild(BuildManager.java:167)
at org.eclipse.core.internal.events.BuildManager.basi cBuild(BuildManager.java:201)
at org.eclipse.core.internal.events.BuildManager$1.ru n(BuildManager.java:230)
at org.eclipse.core.runtime.SafeRunner.run(SafeRunner .java:37)
at org.eclipse.core.internal.events.BuildManager.basi cBuild(BuildManager.java:233)
at org.eclipse.core.internal.events.BuildManager.basi cBuildLoop(BuildManager.java:252)
at org.eclipse.core.internal.events.BuildManager.buil d(BuildManager.java:285)
at org.eclipse.core.internal.events.AutoBuildJob.doBu ild(AutoBuildJob.java:154)
at org.eclipse.core.internal.events.AutoBuildJob.run( AutoBuildJob.java:217)
at org.eclipse.core.internal.jobs.Worker.run(Worker.j ava:58)
#
# An unexpected error has been detected by Java Runtime Environment:
#
# SIGSEGV (0xb) at pc=0x00000002, pid=10002, tid=3085106064
#
# Java VM: Java HotSpot(TM) Client VM (1.6.0_03-b05 mixed mode, sharing)
# Problematic frame:
# C 0x00000002
#
# An error report file with more information is saved as hs_err_pid10002.log
#
# If you would like to submit a bug report, please visit:
# http://java.sun.com/webapps/bugreport/crash.jsp
#

[Snowhog]

Re: Eclipse fails to load: Java error

What version of Eclipse was installed? A Gutsy 32-bit Ubuntu .deb package is available here.

[gabrielr]

Re: Eclipse fails to load: Java error

Great! I'm not sure why the one using "apt-get install eclipse" is different, but it works. Thanks

[Snowhog]

Re: Eclipse fails to load: Java error

In your case, using apt-get install eclipse uses the repositories that are listed in /etc/apt/sources.list. The eclipse .deb package I pointed you to is in a repository that is not in your list.