If the nvidia config works correctly then try to use it to reset the desktops.
A recent kernel update seemed to knock my multi-display config out of whack in a similar way and the system settings would not allow me to fix it properly but the displays manager in the amd config worked to restore the setup.
Otherwise uninstall the video drivers and do a clean install of them.
A recent kernel update seemed to knock my multi-display config out of whack in a similar way and the system settings would not allow me to fix it properly but the displays manager in the amd config worked to restore the setup.
Otherwise uninstall the video drivers and do a clean install of them.
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